rs33386048 SNP Detail

Summary

• ID
  rs33386048
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:54983204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGG GTTGGGCTTT GCCACGGGGG
  K
  GTGGGGGGAG ACCCGCCTCC TCCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46269990	mCV23010044	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss322666366	CHEV_8_55615522	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33386048					SNP	G	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:54983204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20350	CpG island 20350	within coordinates
Rr400849	regulatory region 400849	within coordinates
Rr663552	regulatory region 663552	within coordinates
Spcs3	signal peptidase complex subunit 3 homolog (S. cerevisiae)	171 bp upstream
Tssr77368	transcription start site region 77368	536 bp downstream
Tssr81305	transcription start site region 81305	806 bp upstream
Tssr81306	transcription start site region 81306	755 bp upstream
Tssr81307	transcription start site region 81307	223 bp upstream
Tssr81308	transcription start site region 81308	162 bp upstream