rs33386236 SNP Detail

Summary

• ID
  rs33386236
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25233226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAG CCACGGAAGG CACGGCAGCA
  W
  GACCTGGCCT CTGCGCTTTG GGTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39529393	mCV25256826	ABI	CRAMUS_MOUSE	f	SNP	T	A				T		A
ss48356874	NES12235489	PERLEGEN	MM_PANEL2	f	SNP		A	T	T	T		T		A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33386236					SNP	T	A	T	T	T	T	T	A	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356874	NES12235489	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25233226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	within coordinates
Cpgi8752	CpG island 8752	855 bp proximal
Cramp1	cramped chromatin regulator 1	within coordinates
Ift140	intraflagellar transport 140	1830 bp upstream
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	1508 bp upstream
Tssr143119	transcription start site region 143119	1816 bp upstream
Tssr146804	transcription start site region 146804	54 bp downstream
Tssr146805	transcription start site region 146805	1437 bp downstream
Tssr146806	transcription start site region 146806	1456 bp downstream
Tssr146807	transcription start site region 146807	1489 bp downstream
Tssr146808	transcription start site region 146808	1514 bp downstream
Tssr146809	transcription start site region 146809	1546 bp downstream