rs33387130 SNP Detail

Summary

• ID
  rs33387130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59956950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTACAGTTAT TTGTATAATC TGTAAGCCGT AATCTCATTT TTTTTTCTAG TTTCGGTTAA
  GAAAAAAAAA AAAGCTAGTT AAACTGTAAG AACTAAACAC TTTAAAAGAC TAATAGCCCA
  TTACCAACTA AACGTGCTGT GCTCCATCAG AGCCCCAGAA TGTCAGCTGG CTGTCTCAAT
  TTTTAACCTT CCACTCCCCA ATTCCCTTCA ACCAATCAAG TTAAACTAAA GGCAAAGAAC
  ACCCCGTTCC CTCCAACAGT GTACCCGCAG TCTCCTAAAA ACGAGTTAAA AAAAAAAAAA
  R
  AACCCCTTAA CCTAGGTACA CGTTATTACC CACGAAGACA AAAAGGTCAT TTAAAATATA
  TATATATTAA GGTGTTTATT AAGAACACAA TAAACTCTTG AAGTTTGTGT AATTACAAAT
  TAGATAATTT AGTTTTCAGA ATGAAGACCA AGTAAAAATG TAGTTCTCAG AGAATGATTT
  GCCCATGTAT TATTTTATGC GTGCATATGT GGCTAGATGT ATCCTAAAAG ATGCTATTGT
  TTTATGTTTC CTCCTCAGCC ACTGGCTGTG ATTTTAATTG TGCTGGAGGA TCTTCATTAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45271836	mCV25043969	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33387130					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59956950 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	895 bp distal
Gm13620	predicted gene 13620	787 bp downstream
Rr557597	regulatory region 557597	1500 bp distal
Rr557598	regulatory region 557598	920 bp distal
Rr557599	regulatory region 557599	419 bp distal
Rr557600	regulatory region 557600	582 bp proximal
Tssr24181	transcription start site region 24181	1008 bp upstream
Tssr24182	transcription start site region 24182	988 bp upstream
Tssr24183	transcription start site region 24183	831 bp upstream
Tssr24184	transcription start site region 24184	783 bp upstream