rs33387456 SNP Detail

Summary

• ID
  rs33387456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6180841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAGACTTT AGCAGTTGTA TTTTCCAATC TTACTTAACT
  CTCTTAATAT GTTTTCATTA AATTCTTTTA TCTATTAATT ATACATGTAG ATAAAGGTGA
  Y
  TTTAGGTACT TCCTACTTTT GTATGACTTT TCACCTTGTG ATAATATACC AACTGGAATT
  TGGGATGATA CTGAATAGCA CATTTTGTGA GCATCTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss39530353	mCV22811239	ABI	CRAMUS_MOUSE	f	SNP		C				T
ss60525305	NES16542743	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T		C	T	T		T	T
ss145081478	ENSMUSSNP7046351	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325290124	CHEV_17_6130566	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs33387456					SNP	T	C	C	C	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60525305	NES16542743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6180841 () rs orientation: forward

Symbol	Name	Function Class
Gm15590	predicted gene 15590	1288 bp downstream
Gm55175	predicted gene, 55175	1270 bp downstream
Gm66616	predicted gene, 66616	1106 bp upstream
Rr392221	regulatory region 392221	548 bp downstream
Rr521310	regulatory region 521310	851 bp distal
Rr521311	regulatory region 521311	1668 bp proximal
Tulp4	TUB like protein 4	within coordinates