rs33387481 SNP Detail

Summary

• ID
  rs33387481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7883331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAAATGG GGGTTTTGTT
  TGTCTGGTTT TTTTGAGACA GGACTTCTCT GTGCAGTCCT GGCTGTTCAC ACTGACTTTG
  GAGACCAGGC TGACCTCAAA CTCAGAGATC CACCTACCTC TGCCTTCCTA GTGCTGGAAT
  TAAAGGCCTG TGCCACCACC TCCTGGCACA AAATTAATTG TTTTAAAGGA AAAATGTCTG
  Y
  GCATGCGAGC CATTCAGATA TCTACTTGGG AAACAGTCAG TTTCCCAAAC CCTAAACCAA
  CCAACTAACC AAAGAAGTAA CTAAGGGGCA TTCAGGCCCC TGGAAGAGAA AGCTGTATAT
  TTTGTTTTAG GTTTTCCAAT CCTATTTGGG GCTCCGTGTT CACAGCTTTC CCAAAGGACC
  AGAATTTGAT TCCTAGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806994	NES10978056	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33387481					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806994	NES10978056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7883331 () rs orientation: forward

Symbol	Name	Function Class
Glod5	glyoxalase domain containing 5	within coordinates
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Rr689713	regulatory region 689713	1407 bp distal
Rr689714	regulatory region 689714	30 bp distal
Rr689715	regulatory region 689715	165 bp proximal
Rr689716	regulatory region 689716	248 bp proximal
Tssr162841	transcription start site region 162841	1511 bp upstream
Tssr162842	transcription start site region 162842	1253 bp upstream
Tssr162843	transcription start site region 162843	1357 bp downstream
Tssr162844	transcription start site region 162844	1401 bp downstream