rs33387482 SNP Detail

Summary

• ID
  rs33387482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100680138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTACCC AACCCTAGTC
  CTAGCATTGG GGCTAGAGAA TGGAAAATGC CTGAAAATGT CATGATGTTC CCAAAGGGCT
  TGCTGAGCCC TGAGAAGACA TTCTCCATGA AACAAGCCCC CAAACAACCT CCAGGCTTGG
  CAGCATAGCA TCTGCTTAGT CAGCAAGCAG TAATCTCATA ACCTTGACTC TGGTAGAGAC
  Y
  CGTGGAGATC TATGGCTGTC TCTACTTTGA CACTAGATGA GAGATCAGCA TGGGTAGCCA
  GGGGCCTTCA CTTTTCAAGA GCCTTCTGAA GGTGGGTGAG GAGATCGCTG GCTTGTGAAA
  TGGAGGCACT GCTGAGTGCA GCAGGCGTGC ATCTTGGTGA ATGTGAAGCA GTAATAAACA
  CAACCAGTAC ACAAGAGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806995	NES10722742	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33387482					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806995	NES10722742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100680138 () rs orientation: forward

Symbol	Name	Function Class
Rr581903	regulatory region 581903	1145 bp distal
Rr581904	regulatory region 581904	485 bp proximal