rs33388559 SNP Detail

Summary

• ID
  rs33388559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119573690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGTTC TTTTTCGGGG
  GCTAGGCAGG CGATGGTAAC TGAGTGCCTG GGCGTCTAAA GGAGGTTGAG GAGTACGCGA
  CCCACGGAGC GGGAGCCGGC GGGTCGGCTG GCGTACCTGG GTAACTGTCA GGTAGGGCTG
  GAGAGATCAG AGCGGGGTAG CCTTGCCCCG GGAGCCCTGA GAGAAAAAGG GGCGCGTGAG
  Y
  TTTTCCCTCT CCTCCCCCTC TCGGTGCCGC GGCCCCACCC CCGCCGTTGC CACGGTTTCC
  CTCTCTTGAG TGGGAGTGGA GCGGAGCTCC TGGCTCTGCT CCGGAGCCGC TGCCGTCTGC
  TCCCCGCGCG CGCACGAGGC GTGGATGCGG GAAGGGAGGG GCGCAGGGCT AGAACCGAGC
  GGAACCAAGA TCCACCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45272910	mCV22556918	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147341082	ENSMUSSNP2465623	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33388559					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119573690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm75736	predicted gene, 75736	14 bp upstream
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563568	regulatory region 563568	862 bp distal
Rr563569	regulatory region 563569	1140 bp distal
Rr563570	regulatory region 563570	1098 bp distal
Rr563571	regulatory region 563571	within coordinates
Rr563572	regulatory region 563572	8 bp proximal
Rr563573	regulatory region 563573	1309 bp proximal
Rr563574	regulatory region 563574	1477 bp proximal
Rr563575	regulatory region 563575	1852 bp proximal
Tssr19656	transcription start site region 19656	904 bp downstream
Tssr19657	transcription start site region 19657	878 bp downstream
Tssr19658	transcription start site region 19658	854 bp downstream
Tssr25827	transcription start site region 25827	4 bp upstream