rs33389016 SNP Detail

Summary

• ID
  rs33389016
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100680522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTACACA AGAGCGGTCA
  GATATCTATT ACTTGCAGCA GGCAAGGATA GCACCCGAGT TTTTTTTTCC AAAGCATTGC
  TTTGGAAACC AGGGCAATGG AAAGAGGGGG TTGTGCTCTG GGCTATCCAT ATTCACATAG
  GGCTGGACCC ATTCTTAAGC ATGCTCGTTA AGGAGCAGGT CCTAAGTAGG CTCCGTTTGT
  S
  GTCATGAAGA GTAAAATGAT GGACGGGAAT ACCTCTGGGT GCGCTCACCT TGCACCATAA
  AGTTTTAGCT GACAATAAAA GAAAGGACAT TCTGAAGGTG CATTGCCCCA GGGCGTCTGC
  CCTGCAAGGT GGTTAACACT GGGAATGGTT TGGACTGACA ATACGTTGAC ACAGAACAAA
  GCAGTGAGTC CAAGTAGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46807010	NES10722747	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33389016					SNP	C	C	C	C	C	C	G	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46807010	NES10722747	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100680522 () rs orientation: forward

Symbol	Name	Function Class
Rr581903	regulatory region 581903	1529 bp distal
Rr581904	regulatory region 581904	101 bp proximal