rs33389022 SNP Detail

Summary

• ID
  rs33389022
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100680570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCACCCGA GTTTTTTTTT
  CCAAAGCATT GCTTTGGAAA CCAGGGCAAT GGAAAGAGGG GGTTGTGCTC TGGGCTATCC
  ATATTCACAT AGGGCTGGAC CCATTCTTAA GCATGCTCGT TAAGGAGCAG GTCCTAAGTA
  GGCTCCGTTT GTCGTCATGA AGAGTAAAAT GATGGACGGG AATACCTCTG GGTGCGCTCA
  S
  CTTGCACCAT AAAGTTTTAG CTGACAATAA AAGAAAGGAC ATTCTGAAGG TGCATTGCCC
  CAGGGCGTCT GCCCTGCAAG GTGGTTAACA CTGGGAATGG TTTGGACTGA CAATACGTTG
  ACACAGAACA AAGCAGTGAG TCCAAGTAGT GATGACTGTG ACTATTTCCA GCTGCCCCTG
  CAGTGCGGTG CTATTGGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46807016	NES10722749	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33389022					SNP	C	C	C	C	C	C	G	C	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46807016	NES10722749	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100680570 () rs orientation: forward

Symbol	Name	Function Class
Rr581903	regulatory region 581903	1577 bp distal
Rr581904	regulatory region 581904	53 bp proximal