rs33390084 SNP Detail

Summary

• ID
  rs33390084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24660467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GCTGGAGCCC TGTCCACACT
  Y
  ACCTGGGTCT GATCTAGGTC AAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39530383	mCV24345640	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss325331715	CHEV_17_24578438	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33390084					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24660467 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	within coordinates
Rr329768	regulatory region 329768	1867 bp distal
Rr329769	regulatory region 329769	within coordinates
Rr337043	regulatory region 337043	1564 bp distal
Rr340710	regulatory region 340710	within coordinates
Tssr146730	transcription start site region 146730	1094 bp upstream
Tssr146731	transcription start site region 146731	664 bp downstream
Tssr146732	transcription start site region 146732	1584 bp downstream
Tssr146733	transcription start site region 146733	1600 bp downstream