rs33390565 SNP Detail

Summary

• ID
  rs33390565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTATTAATC ATCTTAAGTT
  CCCTGAAATG AGTTAAGCTT GACAGCTAAG CTAGAGGGCC GAGACATTTA CATATCCTGT
  GAGTTTTCTT TGGACCTAAA TGACACTTGT CTGGTTATTC AGTTCCTGCT TTAAAGATAC
  AAAGTAAAGC TACTGTGCTG TCATTCTCTC CTCAAAATAC TTTTTGAATG GGTTCTCTCC
  R
  AATGCTGTCC AGCAAAGTTC CTAGAACGCC AAAGGCTACC TTAAAAAAAA AAAAAAAAAA
  AAAACTGTTT GGGGCTTAAA CCTTCTCCAT GACCTTTTCA AGCCCAGAGT GACAAAGCAG
  TCTTTCAGAG AAGTGATGGT TTTTAAGTAA TAACTACATA CACAGTTTAC ACAACAGTGT
  GCAAACAATA CCGATACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45272584	mCV22628423	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147514325	ENSMUSSNP720068	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss320498567	CHEV_2_126757598	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33390565					SNP	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			905 bp proximal
Gm75308	predicted gene, 75308			831 bp upstream
Rr564422	regulatory region 564422			467 bp proximal
Rr564423	regulatory region 564423			1193 bp proximal
Rr564424	regulatory region 564424			1226 bp proximal
Rr564425	regulatory region 564425			1363 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			39 bp downstream
Tssr26085	transcription start site region 26085			1131 bp downstream
Tssr26086	transcription start site region 26086			1260 bp downstream
Tssr26087	transcription start site region 26087			1291 bp downstream
Tssr26088	transcription start site region 26088			1353 bp downstream
Tssr26089	transcription start site region 26089			1367 bp downstream