rs33392242 SNP Detail

Summary

• ID
  rs33392242
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:13589595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATTATT CAGCAAAGAC
  ATTTTGTATA TTATTAAAAA GTCAACATAG TCAAAACAAG TTCATGTCCT ACTATAAAAG
  GAGTTAAATA CTACGAAATA GAGGCATATA TGGTTATATT ACTACTGCAT TATAGGTATA
  TGTTGCTATA GTTGAACACT ATATTGGGCC ATTAAAATTT AATGGAATAA TGTTTGTGAA
  S
  ATGAGAAAAT GCCTTAACAC TAATATGTTA GTAAAGTATA GGTTATTTTT TTCCTTCATT
  TCAATATTTA TTTTTGATGC ATTTTCACAG TCAATAAAAA ATCAGATTTC CATAGGGAAA
  AGACATATAC ATAATTTATT GTACATTTAA GTGTTTGGTA GAGATGATTT ACTGTGAGGC
  AGGCACTAGT GTTGATGGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46808361	NES10635591	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33392242					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808361	NES10635591	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:13589595 () rs orientation: forward

Symbol	Name	Function Class
Ralyl	RALY RNA binding protein-like	within coordinates
Tssr28385	transcription start site region 28385	1411 bp upstream