rs33392280 SNP Detail

Summary

• ID
  rs33392280
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTTCCGA GCGCCAACGC
  AGCCTCTGTA GCCCGCAAGT CTTCGTCGCT TGCTCCGGGC TCTGAAGTCC GGGGCCACCA
  GGGGCCGCAG CGCTGGGGGG TCGGTCTAGC TGCGAGGATC CGGGCTGCCC ACGAAGCGAA
  GGGCGGGCGC CCAGGTGAGT GCGGGGTGAG AGGGCGGGAA TGGGACACAC CCCCGTCCCC
  K
  AGAACGTGCA GACCTCGGGC TCCAGGGATC TGAGATCCTG GGCGAGCTGT GGGGGTGCCG
  AGGAAGGAAG AACCCGTCCT AGGAGCAACC GATCCCCGGC GGTGGGATGC GCAGTCTACG
  AAAGGTGGAG GGTACCCAGG TGGCCAGGTG AGGCGAATTG CCGCCACCCA GGGCGACCCT
  GGGATAGCCC TAGATAGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45272462	mCV22910308	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss147984307	ENSMUSSNP2995834	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33392280					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	within coordinates
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	763 bp distal
Rr567551	regulatory region 567551	323 bp distal
Rr567552	regulatory region 567552	273 bp distal
Rr567553	regulatory region 567553	109 bp distal
Tssr20863	transcription start site region 20863	1128 bp downstream
Tssr20864	transcription start site region 20864	1092 bp downstream
Tssr20865	transcription start site region 20865	317 bp downstream
Tssr20866	transcription start site region 20866	259 bp downstream
Tssr26882	transcription start site region 26882	217 bp downstream