rs33392776 SNP Detail

Summary

• ID
  rs33392776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24571350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG GGCCTCCGAG CCCCTGCCTA
  Y
  CGCCGGGACC TGCGGGCTCG CGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39530433	mCV24344248	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145351501	ENSMUSSNP587832	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325330830	CHEV_17_24489321	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33392776					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24571350 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	within coordinates
Abca17	ATP-binding cassette, sub-family A member 17	1308 bp upstream
Cpgi8716	CpG island 8716	within coordinates
Rr405082	regulatory region 405082	358 bp downstream
Rr523280	regulatory region 523280	1358 bp distal
Rr523281	regulatory region 523281	320 bp distal
Rr523282	regulatory region 523282	1136 bp distal
Rr523283	regulatory region 523283	451 bp distal
Rr523284	regulatory region 523284	within coordinates
Rr523285	regulatory region 523285	248 bp distal
Rr523286	regulatory region 523286	1153 bp proximal
Tssr143021	transcription start site region 143021	428 bp downstream
Tssr143022	transcription start site region 143022	408 bp downstream
Tssr143023	transcription start site region 143023	348 bp downstream
Tssr143024	transcription start site region 143024	227 bp downstream
Tssr146725	transcription start site region 146725	1312 bp upstream
Tssr146726	transcription start site region 146726	1268 bp upstream