rs33393143 SNP Detail

Summary

• ID
  rs33393143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23899031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA AAAGGCACTG GGATCTTGAA
  Y
  TTTAGCTCCT TAAAGCTGTG TGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39530553	mCV24340450	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145330347	ENSMUSSNP3010290	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325326763	CHEV_17_23817024	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33393143					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23899031 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	within coordinates
Cpgi8684	CpG island 8684	176 bp distal
Rr523108	regulatory region 523108	388 bp distal
Rr523109	regulatory region 523109	67 bp distal
Tssr142943	transcription start site region 142943	680 bp downstream
Tssr142944	transcription start site region 142944	321 bp downstream
Tssr142945	transcription start site region 142945	302 bp downstream
Tssr142946	transcription start site region 142946	981 bp upstream
Tssr142947	transcription start site region 142947	1485 bp upstream
Tssr142948	transcription start site region 142948	1738 bp upstream
Tssr146645	transcription start site region 146645	373 bp downstream