rs33393302 SNP Detail

Summary

• ID
  rs33393302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:54982524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATGTT TAAACCGCCC
  CTGTGCATCC TGCACATCCT AACTTCAAGG CAGCAGCTGC CAAGTAGTGT GTCCACGAGG
  GACAGACAGA CGTCTTCAGG GACTGTCAAA GAGAACCAAC TGGGGCTGGA CGTGACACCA
  GAGCCACCCA CCGAGGCGCC TGGATGGACA CCCAGGCCAG GGGGGACTGG GGACTGGCTG
  R
  GGTCCCCACG CGCGCTTGCA GGCGGGGAGG CGCCGGGCGG AAGCGCGGGT GTGGGTGTGC
  TGTTGTGTTG CTCCCTCATT GGCCCGGGTG GGTGAGGGAC GTGCAGAACA GGAAGGAAGG
  GGAGCGCTGA CCCAGGCCAC TCGGGAGACG ACCGCGCAGG GCTGGGGTCT GAGGGCCCCG
  GGACGCGCGT CCGCGGAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46270711	mCV23009861	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss144900457	ENSMUSSNP5912176	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss322666364	CHEV_8_55614842	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33393302					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:54982524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20350	CpG island 20350	within coordinates
Rr400849	regulatory region 400849	470 bp upstream
Rr663552	regulatory region 663552	499 bp proximal
Spcs3	signal peptidase complex subunit 3 homolog (S. cerevisiae)	within coordinates
Tssr77367	transcription start site region 77367	1458 bp downstream
Tssr77368	transcription start site region 77368	117 bp upstream
Tssr81305	transcription start site region 81305	126 bp upstream
Tssr81306	transcription start site region 81306	75 bp upstream
Tssr81307	transcription start site region 81307	446 bp downstream
Tssr81308	transcription start site region 81308	462 bp downstream