rs33393883 SNP Detail

Summary

• ID
  rs33393883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:13591102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCACGCA CGACTTCTGC
  TGATTATTTT CTCTCCTGCC TTTATTTCCT ATTCCCTGGT CACAGCTCTT TTTTTTTTTT
  TTTTTTTTTT TTTTTTTTTT TTTTGCCTCT TTATCATTTT GTACCACTCT ACAAAAGAAA
  TTATAAAAGG AACTATCATA AAAGAAAGCC AGATAACTCC CTAATTTTCA GTACATTAGA
  R
  ATTTTTGGAA AAAGTCCACA GCGAAATTGC TCATACACTC TCAAGAGTCT GGTCACTGCT
  AATTACTCCT CTCAGCAAAG CCATTGCTTA GCTTTGGCAG GCTGTCCCAT TTGCTCATTT
  GTCTTTTGAG TCATCTAAAA AATGAGAATC TTACTTTTCT AAGAGTTCGA TTAAAACCCT
  TTTTCCTGTG ATCTTTATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46808382	NES10635516	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33393883					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808382	NES10635516	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:13591102 () rs orientation: forward

Symbol	Name	Function Class
Ralyl	RALY RNA binding protein-like	within coordinates
Tssr28385	transcription start site region 28385	95 bp downstream