rs33394257 SNP Detail

Summary

• ID
  rs33394257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85922366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG GACTCAGCAC CCTCAGTTCA
  R
  CTTAAGCCGG GGCAGGCCTT CTAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39530955	mCV25102122	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		A
ss62953702	NES17409303	PERLEGEN	MM_PANEL2	f	SNP			G	G	A	A	G		G	A	G		G	G	A		G
ss146152522	ENSMUSSNP1082189	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss325486759	CHEV_17_86014278	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33394257					SNP	G	G	G	G	A	A	G	A	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62953702	NES17409303	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85922366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	1866 bp distal
Cpgi9588	CpG island 9588	859 bp distal
Cpgi9589	CpG island 9589	within coordinates
Cpgi9590	CpG island 9590	1641 bp proximal
Gm55782	predicted gene, 55782	1334 bp downstream
Gm55783	predicted gene, 55783	203 bp downstream
Gm55784	predicted gene, 55784	22 bp upstream
Gm55785	predicted gene, 55785	1764 bp upstream
Rr340291	regulatory region 340291	within coordinates
Six3	sine oculis-related homeobox 3	within coordinates
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	1700 bp downstream
Tssr146085	transcription start site region 146085	1453 bp downstream
Tssr149706	transcription start site region 149706	1874 bp upstream
Tssr149707	transcription start site region 149707	126 bp upstream
Tssr149708	transcription start site region 149708	62 bp downstream
Tssr149709	transcription start site region 149709	109 bp downstream
Tssr149710	transcription start site region 149710	198 bp downstream
Tssr149711	transcription start site region 149711	226 bp downstream
Tssr149712	transcription start site region 149712	516 bp downstream