rs33394429 SNP Detail

Summary

• ID
  rs33394429
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24654713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTTGTAT TTTTATTTTT CAAGACAGGG TTTCTATATG
  TAGCCCTGAC CTGGAACTCT TGATGTAGAG CAGGCTGGCC TTGAACTCAC AGAGATCTTC
  K
  GCCTCTGCTT CCTGAGTGCT GGGATTGAAA CCATGCACCT CCACCACCTG GCCAGAGTAT
  TAATATTAGT TTTAGAATTG TAAAGTAGAA CTATACTTT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45773902	mCV23236498	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss148093819	ENSMUSSNP7032840	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33394429					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24654713 () rs orientation: forward

Symbol	Name	Function Class
2310074N15Rik	RIKEN cDNA 2310074N15 gene	1226 bp downstream
Cpgi15602	CpG island 15602	1626 bp distal
Cpgi15603	CpG island 15603	1722 bp proximal
Gm10472	predicted gene 10472	within coordinates
Rr608322	regulatory region 608322	1797 bp distal
Rr608323	regulatory region 608323	1310 bp distal
Rr608324	regulatory region 608324	1972 bp proximal
Tmub1	transmembrane and ubiquitin-like domain containing 1	1861 bp upstream
Tssr50326	transcription start site region 50326	1885 bp upstream
Tssr50327	transcription start site region 50327	1987 bp downstream