rs33394626 SNP Detail

Summary

• ID
  rs33394626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:13591281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAATTTTC AGTACATTAG
  AGATTTTTGG AAAAAGTCCA CAGCGAAATT GCTCATACAC TCTCAAGAGT CTGGTCACTG
  CTAATTACTC CTCTCAGCAA AGCCATTGCT TAGCTTTGGC AGGCTGTCCC ATTTGCTCAT
  TTGTCTTTTG AGTCATCTAA AAAATGAGAA TCTTACTTTT CTAAGAGTTC GATTAAAACC
  Y
  TTTTTCCTGT GATCTTTATC AAATATATCT GATGCTATAA TTCACAGTTT TCATTACAGC
  ATGCTTCAAG GGATCTTCAA CCTGGAGCCT TAGTGTTCAA CATATAAGGC CAGTATACAA
  AATTGTGTGG GAACTAACTC TTTGATCTGT AATTATTGTA CAGTAATTAG TATAAAGCCA
  CCCTTCATAA CTGACACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46808385	NES10635518	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33394626					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808385	NES10635518	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:13591281 () rs orientation: forward

Symbol	Name	Function Class
Ralyl	RALY RNA binding protein-like	within coordinates
Tssr28385	transcription start site region 28385	274 bp downstream