rs33394632 SNP Detail

Summary

• ID
  rs33394632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:13591519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTCACAG TTTTCATTAC
  AGCATGCTTC AAGGGATCTT CAACCTGGAG CCTTAGTGTT CAACATATAA GGCCAGTATA
  CAAAATTGTG TGGGAACTAA CTCTTTGATC TGTAATTATT GTACAGTAAT TAGTATAAAG
  CCACCCTTCA TAACTGACAC AACTTGGCAG TATTGGGAAT TTTGGCTACT ATTTAAACAG
  Y
  TATTTACTTA CTGAACTAGT TTCTGAAGTA GAGTCTAACT GTGTGATCCA GGCTGTCCCT
  GAACCACTGT GCCACATCCT CCTTAGCATT GGGGATTCTA AGCTTTTGCA ACCACACCTG
  TCCAGATTTT GTGTTAGGGC TCTTATCTTT TCTGTTCTTA CAATTAAATC TTCTAGCATC
  TACCATGTAG CATCTGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46808391	NES10635524	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33394632					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808391	NES10635524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:13591519 () rs orientation: forward

Symbol	Name	Function Class
Ralyl	RALY RNA binding protein-like	within coordinates
Tssr28385	transcription start site region 28385	512 bp downstream