rs33395145 SNP Detail

Summary

• ID
  rs33395145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88374028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGTGCT CTGAAGGAAG
  GGCGGGGGCT GCTGATGCAA TTGGGAGAAG TGATTAATCC TGCCTTTTGC CGGTTCAGCC
  TCCCTCCACC CCAACCTTCA CCTGGTTCTC TTAAACGCCA CAAGGAGTGA GGGACTCCGT
  CTTGGGTAAC TCCGGATTTC TGGGCTCGGT AGGTTCAAGC TCTCAGCTGT AGGGAGCGCT
  Y
  CAGGCTCTGT GCGTTTTTAG TCCAGCTGAA GGGATTTATT TGCAAACCTT AAGAAATCTT
  GTTTCGGCTC TGCTGAGAAC TTAAGAGAGA GTCTGGAGTC GGTTCCAGCT TTTGTCGCCC
  AAACTTTCAG AATGTTTTAG ATCTTTAACC AAGTTAGTTT GCTTTAGGCT TTTTTTTTGG
  GGGGGGGGGG GGGGCAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39530463	mCV23140495	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss146187237	ENSMUSSNP2962008	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33395145					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88374028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	within coordinates
Fbxo11	F-box protein 11	1309 bp upstream
Rr333911	regulatory region 333911	973 bp proximal
Rr333912	regulatory region 333912	1773 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr344409	regulatory region 344409	1663 bp proximal
Rr370332	regulatory region 370332	13 bp downstream
Rr405528	regulatory region 405528	200 bp downstream
Tssr146222	transcription start site region 146222	1799 bp downstream
Tssr146223	transcription start site region 146223	1771 bp downstream
Tssr149795	transcription start site region 149795	871 bp upstream
Tssr149796	transcription start site region 149796	769 bp upstream
Tssr149797	transcription start site region 149797	727 bp upstream
Tssr149798	transcription start site region 149798	607 bp upstream
Tssr149799	transcription start site region 149799	513 bp upstream