rs33395381 SNP Detail

Summary

• ID
  rs33395381
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:13591857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTTATC TTTTCTGTTC
  TTACAATTAA ATCTTCTAGC ATCTACCATG TAGCATCTGA AATCCATACT AGAACAAGCA
  AGTCATGAAG TGGCTTCAGC AAGTCTCAGA CCTCAGGGTC AGAGAGGAGT TTTAGGCTTC
  TGTATCAGTT CTGAAAGACA TTATTATCCC TGAACGATTT GCCTCCATTA GAACAATCTG
  W
  CCTTTCTGTC CACTCTCTCT ATTTGAAACA GCACGGCATC AGTTTTCTAG GAGGACACAC
  AACTGAATTT TTAAAAGACC TTAGAGAATA CACAAGTTCA GAGGAAGCAG TGTGTACTTT
  CATCTCCGTA GCTTTTCTGC CTTTCTTTTG TTTTGAATAT TTGATGACAT TCCAAGTCAA
  GGCATTTTTA TTTTCTCACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46808400	NES10635466	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33395381					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808400	NES10635466	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:13591857 () rs orientation: forward

Symbol	Name	Function Class
Ralyl	RALY RNA binding protein-like	within coordinates
Tssr28385	transcription start site region 28385	850 bp downstream