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rs33395582 SNP Detail
Summary
  • ID
    rs33395582
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:100823299 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTTTGTTT TGTTTTTGTT
    TTTTTAAGAT TTATTTATTT ATTATATGTA AGTACATTGT AGCTGTTTTC AGACACTCCA
    GAAGAGGGCA TCAGATTTCA CTAGGGATGG TTGTGAGCCA CCATGTGGTT GCTGGGATTT
    GAACTCGGGA CCTTTGGAAG AGCAGTCGGC ACTCTTAACC ACTGAGCCAT CTCGCCAGCC
    Y
    TGTGACCAAT TCTTTACCAC ATCAGCTTGA GCACTCCAGA ACTGTGGCTT CAATTTTAAT
    GACAAGCATT GACACCACAC ATAATATGAA ATCTGACTTC TAAATGCATT TGTTATTTTC
    CTTATATTAT TCATTTTAGT CAATTATATA TTTTTTAATG TGGAAGATAT GTGCAACTAA
    TATAATCAAA ACACATTTAT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss46808930 NES10731523 PERLEGEN MM_PANEL2 f SNP T C C C T C T T T C T C C T
ss135542866 ENSMUSSNP3919698 ENSEMBL ENSEMBL_Sanger f SNP C
ss320850233 CHEV_3_100719906 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs33395582 SNP T C C C T C T T T C C T C C T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46808930 NES10731523 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:100823299 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm40108 predicted gene, 40108 763 bp downstream
Rr581925 regulatory region 581925 860 bp proximal
Rr581926 regulatory region 581926 954 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory