rs33395961 SNP Detail

Summary

• ID
  rs33395961
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:134271020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGGTG AGCCCTGGCA
  GCTTCCCTTT TGAGGGACTG AAGTTCCTTA TCAGTGAAAG GAGCCTGTGA CTTTCTATGA
  ATCAGTGGCT GAATTGCTAG AAATCTTAGT TGTATATTAT CTTGAACTGG GGAGGTTCTC
  TCTCACCTTC CCCATCCAGG AGCTCCTGGC TATTTAAGCT GCATTCTGGA CGGGTTGATA
  K
  AACTGCTCCA GGCTGGGGTG GCCCTGTCTA CAGCAGGTAG GCACCTGACC TTTCCAATTC
  TAGTTGAGTT GGCCCCTCTC TGGCTCTGAC ATGCAATCTT ACACAATGTA GCCTTCATTC
  TTTTAAACTT TCATTCCTTT AGTCCTTGAA GATTCCCAGG CTGGTGTCTT TGTCATTGTT
  TCTAGGATGC AAGAGAGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47293006	NES11545873	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		G	T	T	G		T
ss322457591	CHEV_7_141860974	CHEVERUD	SCREENING_POP	f	SNP						T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33395961					SNP	T	T	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47293006	NES11545873	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134271020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19845	CpG island 19845	682 bp proximal
Dock1	dedicator of cytokinesis 1	1396 bp upstream
Rr656983	regulatory region 656983	307 bp proximal
Rr656984	regulatory region 656984	906 bp proximal
Rr656985	regulatory region 656985	1407 bp proximal
Tssr69615	transcription start site region 69615	401 bp upstream
Tssr69616	transcription start site region 69616	1359 bp upstream
Tssr69617	transcription start site region 69617	1376 bp upstream