rs33396184 SNP Detail

Summary

• ID
  rs33396184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:13591892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCATCTA CCATGTAGCA
  TCTGAAATCC ATACTAGAAC AAGCAAGTCA TGAAGTGGCT TCAGCAAGTC TCAGACCTCA
  GGGTCAGAGA GGAGTTTTAG GCTTCTGTAT CAGTTCTGAA AGACATTATT ATCCCTGAAC
  GATTTGCCTC CATTAGAACA ATCTGTCCTT TCTGTCCACT CTCTCTATTT GAAACAGCAC
  R
  GCATCAGTTT TCTAGGAGGA CACACAACTG AATTTTTAAA AGACCTTAGA GAATACACAA
  GTTCAGAGGA AGCAGTGTGT ACTTTCATCT CCGTAGCTTT TCTGCCTTTC TTTTGTTTTG
  AATATTTGAT GACATTCCAA GTCAAGGCAT TTTTATTTTC TCACAATTAA ATTTTACTTA
  AGTATAATGG AAAAGTTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46808403	NES10635468	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33396184					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808403	NES10635468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:13591892 () rs orientation: forward

Symbol	Name	Function Class
Ralyl	RALY RNA binding protein-like	within coordinates
Tssr28385	transcription start site region 28385	885 bp downstream