rs33396495 SNP Detail

Summary

• ID
  rs33396495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGTCGG CACTCTTAAC
  CACTGAGCCA TCTCGCCAGC CTTGTGACCA ATTCTTTACC ACATCAGCTT GAGCACTCCA
  GAACTGTGGC TTCAATTTTA ATGACAAGCA TTGACACCAC ACATAATATG AAATCTGACT
  TCTAAATGCA TTTGTTATTT TCCTTATATT ATTCATTTTA GTCAATTATA TATTTTTTAA
  Y
  GTGGAAGATA TGTGCAACTA ATATAATCAA AACACATTTA TCCATGTTGT TAAAAGAAAA
  TATATAATCT TCCAGATACC TTTTAAAAAT ATTTATTCTC GAGAAAGATG AATAGTGAGC
  TCCTGTGTGA TGACCACATA AAGGGAGTTC ACAGAAGGAC ATGAGCGAGT GTAAATGAAG
  CGTCCACAGT GTGAGACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46808933	NES10731524	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	T	T		C	T	C
ss135542875	ENSMUSSNP3933233	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320850236	CHEV_3_100720065	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs33396495					SNP	T	C	C	C	T	C	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808933	NES10731524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823458 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	922 bp downstream
Rr581925	regulatory region 581925	701 bp proximal
Rr581926	regulatory region 581926	795 bp proximal