rs33396501 SNP Detail

Summary

• ID
  rs33396501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTGGAA GATATGTGCA
  ACTAATATAA TCAAAACACA TTTATCCATG TTGTTAAAAG AAAATATATA ATCTTCCAGA
  TACCTTTTAA AAATATTTAT TCTCGAGAAA GATGAATAGT GAGCTCCTGT GTGATGACCA
  CATAAAGGGA GTTCACAGAA GGACATGAGC GAGTGTAAAT GAAGCGTCCA CAGTGTGAGA
  Y
  TGACACTTTC TGACTGCGTC AACCGGAGTC TATGTGGGGA CCATGACAGA CACTTGCCAG
  TCAACAGAAG TCAAATCCAA AGGGTGAAAC GTCAAAAATA AGACCATGAA GACTTTTTCT
  ACAAGAGCAG GTAGGTAAGT TACAGTGGGG CCGATGCCTT GTGTAGTTTG AGTCCAGCCT
  TCGCCTCTAT GGAGAGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46808939	NES10731529	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	C	C	C		T	C	T		C
ss135542893	ENSMUSSNP1521665	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320850239	CHEV_3_100720262	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33396501					SNP	C	C	T	T	C	T	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808939	NES10731529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823655 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1119 bp downstream
Rr581925	regulatory region 581925	504 bp proximal
Rr581926	regulatory region 581926	598 bp proximal