rs33396827 SNP Detail

Summary

• ID
  rs33396827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:134271448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTCTAA TAGCTTGCTG
  TGGACCCGAG GTCCCCTTGC ACCCCTCCCC TTAGTTTTAA CCTTTTCTTG GATTCTAATG
  AACGCTCAGG GTGTGTCTAT GGGCAGGCCT TGAAGAAATC GGAAGTATTG CACTTGTGGG
  TGGCTGGCAC TGGGTGAGTC TGAGACCAGC CTCCTTCAGA TTAGAGTTGC TAGGAGCTGC
  Y
  TGTTCTAAGC TGGAACTGGC TTCCTTTCTC TTCCCACTTC CTCTCTTTCC CCACTTCAGC
  AGGCCCAGTT CCTACTGAAC GCCTCAAAGT TGCTGCAAAC TAGGAGCCTC ATTGTGCTGC
  TCCAGACCCT CAACACCCAA AGAGATCTGG GCTGTTAGAA ACACCCAGGG GCTGCAAAGT
  CTTTTCCTAG GCTTCTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47293012	NES11545875	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	C		T
ss322457593	CHEV_7_141861402	CHEVERUD	SCREENING_POP	f	SNP							T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33396827					SNP	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47293012	NES11545875	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134271448 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19845	CpG island 19845	254 bp proximal
Dock1	dedicator of cytokinesis 1	968 bp upstream
Rr656983	regulatory region 656983	within coordinates
Rr656984	regulatory region 656984	478 bp proximal
Rr656985	regulatory region 656985	979 bp proximal
Tssr69615	transcription start site region 69615	13 bp downstream
Tssr69616	transcription start site region 69616	931 bp upstream
Tssr69617	transcription start site region 69617	948 bp upstream