rs33396832 SNP Detail

Summary

• ID
  rs33396832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:134271565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTTCCTT TCTCTTCCCA CTTCCTCTCT TTCCCCACTT
  CAGCAGGCCC AGTTCCTACT GAACGCCTCA AAGTTGCTGC AAACTAGGAG CCTCATTGTG
  Y
  TGCTCCAGAC CCTCAACACC CAAAGAGATC TGGGCTGTTA GAAACACCCA GGGGCTGCAA
  AGTCTTTTCC TAGGCTTCTC TTACCAGTGC TGACTGTACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47293018	NES11545877	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33396832					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47293018	NES11545877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134271565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19845	CpG island 19845	137 bp proximal
Dock1	dedicator of cytokinesis 1	851 bp upstream
Rr656983	regulatory region 656983	3 bp distal
Rr656984	regulatory region 656984	361 bp proximal
Rr656985	regulatory region 656985	862 bp proximal
Tssr69615	transcription start site region 69615	130 bp downstream
Tssr69616	transcription start site region 69616	814 bp upstream
Tssr69617	transcription start site region 69617	831 bp upstream