rs33397379 SNP Detail

Summary

• ID
  rs33397379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45827328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT GAGTCCTCCT CGGATCGCGA
  R
  CCACAGTCTC TCTCGGGCAG TTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45774240	mCV22817603	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss51715763	NES14748551	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	A		G	G	G		G
ss148353197	ENSMUSSNP2873440	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321527219	CHEV_5_46061225	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33397379					SNP	A	A	G	G	G	A	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715763	NES14748551	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45827328 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	278 bp upstream
Cpgi15841	CpG island 15841	within coordinates
Ncapg	non-SMC condensin I complex, subunit G	within coordinates
Rr367838	regulatory region 367838	103 bp downstream
Rr611093	regulatory region 611093	1359 bp distal
Rr611094	regulatory region 611094	1475 bp distal
Rr611095	regulatory region 611095	1070 bp distal
Rr611096	regulatory region 611096	57 bp distal
Rr611097	regulatory region 611097	295 bp distal
Tssr46141	transcription start site region 46141	85 bp downstream
Tssr46142	transcription start site region 46142	41 bp downstream
Tssr46143	transcription start site region 46143	18 bp upstream
Tssr46144	transcription start site region 46144	247 bp upstream