rs33397434 SNP Detail

Summary

• ID
  rs33397434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAATCAA AACACATTTA
  TCCATGTTGT TAAAAGAAAA TATATAATCT TCCAGATACC TTTTAAAAAT ATTTATTCTC
  GAGAAAGATG AATAGTGAGC TCCTGTGTGA TGACCACATA AAGGGAGTTC ACAGAAGGAC
  ATGAGCGAGT GTAAATGAAG CGTCCACAGT GTGAGACTGA CACTTTCTGA CTGCGTCAAC
  Y
  GGAGTCTATG TGGGGACCAT GACAGACACT TGCCAGTCAA CAGAAGTCAA ATCCAAAGGG
  TGAAACGTCA AAAATAAGAC CATGAAGACT TTTTCTACAA GAGCAGGTAG GTAAGTTACA
  GTGGGGCCGA TGCCTTGTGT AGTTTGAGTC CAGCCTTCGC CTCTATGGAG AGCTTGAAAA
  CTGACATCAT TCTAACTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46808942	NES10731531	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	C	C		T	C	T		C
ss135542896	ENSMUSSNP6116808	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
ss320850240	CHEV_3_100720286	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33397434					SNP	C	C	T	T	T	C	T	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808942	NES10731531	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823679 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1143 bp downstream
Rr581925	regulatory region 581925	480 bp proximal
Rr581926	regulatory region 581926	574 bp proximal