rs33397443 SNP Detail

Summary

• ID
  rs33397443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100823810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGACA TGAGCGAGTG
  TAAATGAAGC GTCCACAGTG TGAGACTGAC ACTTTCTGAC TGCGTCAACC GGAGTCTATG
  TGGGGACCAT GACAGACACT TGCCAGTCAA CAGAAGTCAA ATCCAAAGGG TGAAACGTCA
  AAAATAAGAC CATGAAGACT TTTTCTACAA GAGCAGGTAG GTAAGTTACA GTGGGGCCGA
  Y
  GCCTTGTGTA GTTTGAGTCC AGCCTTCGCC TCTATGGAGA GCTTGAAAAC TGACATCATT
  CTAACTGTCT AACTGTCACC TTCTCAAGGT TGGAAGCTGC CCATTTATCA CCAAGAGTCA
  GTATCGGGGA ACTATTTAAT GCCTGTTGTC TCTCATAATT ACATCACCTC ATAATCTATT
  CCTGCCTTCG TTGCTTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46808951	NES10731536	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	T	T	T		C	T	C		T
ss135542902	ENSMUSSNP728801	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss320850244	CHEV_3_100720417	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33397443					SNP	T	T	C	C	C	T	C	C	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808951	NES10731536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100823810 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1274 bp downstream
Rr581925	regulatory region 581925	349 bp proximal
Rr581926	regulatory region 581926	443 bp proximal