rs33397529 SNP Detail

Summary

• ID
  rs33397529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGGCCG GCTTGGTCCA
  CGGTGTGAAT TTCTGCACTG TGTTAGTTAT TGTTTGGTTG CTGTGAGAAA ACATCTTAAC
  AAAAGCAACT CAGCAAAGGA AGGGTCCATT TTGGCTTGTA GCGTCGGGGA TACACTCCAT
  CCTGGAGGGG ACACATGGTG GCCAGAGGCA GCTGTACATT GCATGCTCAG TCAGGAAGCT
  R
  AGAGATACAC GCAGCCTCTG GGTTCTCTTT GTCCTTTTGA TATAGCTAGG GATTTTGGCC
  CACGGAATGT TACTGCCCAT AGGTCAGGGT GGATCTTCTT ACACCAAAGA ACTGAGTCCA
  GATAGTCTCT CATTCATGTT CCTATAGGCT AACCTGACCT AGAAAATCCC TCACGGGCAA
  GCTCATAGGT TTGCCCCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39531197	mCV24482063	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss145714977	ENSMUSSNP125294	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
ss325408115	CHEV_17_48487401	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33397529					SNP	G	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655104 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1904 bp distal
Rr335234	regulatory region 335234	1103 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1659 bp downstream
Tssr145094	transcription start site region 145094	1631 bp downstream
Tssr145095	transcription start site region 145095	1583 bp downstream
Tssr145096	transcription start site region 145096	1550 bp downstream
Tssr145097	transcription start site region 145097	545 bp downstream
Tssr145098	transcription start site region 145098	203 bp downstream
Tssr145099	transcription start site region 145099	404 bp upstream
Tssr145100	transcription start site region 145100	433 bp upstream
Tssr145101	transcription start site region 145101	470 bp upstream
Tssr145102	transcription start site region 145102	569 bp upstream
Tssr148525	transcription start site region 148525	614 bp downstream