rs33397545 SNP Detail

Summary

• ID
  rs33397545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:134271750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCCTCA TTGTGCTGCT
  CCAGACCCTC AACACCCAAA GAGATCTGGG CTGTTAGAAA CACCCAGGGG CTGCAAAGTC
  TTTTCCTAGG CTTCTCTTAC CAGTGCTGAC TGTACATCAC CACTCCCATC AGCTACTAGG
  CACGCTCAAT GCGCTCAGAC CCTGGCAAAA TGGGTGCCCA CTTTGAATGA ATGAATGAAC
  Y
  ACGATGAACT CCTAGCTCTG CTCCAACGCT CTCCACCAGG TCAGAACTGG GGTTTCCGCA
  CTTCACACCA GTGAGTACAT GTGTGGTGTC TGACTATTTG TGTTAGATCC AGGCCTAGAG
  GGCTATAAGG ATTTGTGGTG TGTGTGTTCG CGCGTGCACG CTTGTGTGTG AAAAGATAGC
  ACTTTGTGAG GTGCAGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47293021	NES11545878	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	C		T
ss322457596	CHEV_7_141861704	CHEVERUD	SCREENING_POP	f	SNP							T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33397545					SNP	T	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47293021	NES11545878	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:134271750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19845	CpG island 19845	within coordinates
Dock1	dedicator of cytokinesis 1	666 bp upstream
Rr656983	regulatory region 656983	188 bp distal
Rr656984	regulatory region 656984	176 bp proximal
Rr656985	regulatory region 656985	677 bp proximal
Tssr69615	transcription start site region 69615	315 bp downstream
Tssr69616	transcription start site region 69616	629 bp upstream
Tssr69617	transcription start site region 69617	646 bp upstream