rs33397992 SNP Detail

Summary

• ID
  rs33397992
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52520734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGC ACAGCTCTGG AGAGAGTGTC
  K
  CACTCAGCTG CCAAGTGCCC ATGTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45774415	mCV25026706	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					T		T
ss51118304	NES13854517	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	T	T		G	T	T	T	T	T	G
ss148440011	ENSMUSSNP641999	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33397992					SNP	G	G	T	T	G	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51118304	NES13854517	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52520734 () rs orientation: forward

Symbol	Name	Function Class
Rr611420	regulatory region 611420	within coordinates
Rr611421	regulatory region 611421	410 bp proximal
Sod3	superoxide dismutase 3, extracellular	412 bp upstream
Tssr46168	transcription start site region 46168	520 bp upstream
Tssr46169	transcription start site region 46169	533 bp upstream
Tssr46170	transcription start site region 46170	564 bp upstream