rs33398127 SNP Detail

Summary

• ID
  rs33398127
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166838528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAAGGG CCGGGCACGG
  CTGCGCTGGG TCCGAGGCAT GTTGGGAGTT GTAGTTTCCC AGGAGCTCGG TCTCGGCAGG
  GAATACAGGC CTCGCTTCCT TTCTTTTCTA GGCTTTCTGT TCCCTTCCTA CAGTCACCCC
  TTTTTCCCTA CGCTAACTTT TGTTAACCTG CTGCTGCGTG CAAGACCGAA AGCTGAGAAT
  W
  CAGTGAGAAT GCACAAGTCC CTGCCCTTAT GGAGTTTACT GGGGAAGTCA GAGTAAATGA
  AGTCTGAGCC GAAAACAGAC AAGCACAAGT GCTGTCTGGT TCCTTTCCCG CAGCTCTAAA
  CTGAGTGTGG TTCTGTGGAC AAGAGGCTGG TGTGGGCTTG TTTAGTGTAG TCCTGGGGAT
  TGAAGCAAAC TTCTACCGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss45273347	mCV23755386	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs33398127					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166838528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	within coordinates
Rr40642	regulatory region 40642	873 bp proximal
Rr40643	regulatory region 40643	1873 bp proximal
Rr56101	regulatory region 56101	within coordinates
Rr397498	regulatory region 397498	43 bp downstream
Stau1	staufen double-stranded RNA binding protein 1	309 bp upstream
Tssr27718	transcription start site region 27718	499 bp upstream
Tssr27719	transcription start site region 27719	450 bp upstream
Tssr27720	transcription start site region 27720	388 bp upstream
Tssr27721	transcription start site region 27721	352 bp upstream
Tssr27722	transcription start site region 27722	325 bp upstream