rs33398231 SNP Detail

Summary

• ID
  rs33398231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:78490724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTATATA GTAAAATGAA
  ATAATTGGTT TGCTGATTTT TTTTTAGTTT ATCTACTTTT AACTGGATAT CTTGAAAGCA
  TAGATGATTG ATCCTTTTTT ATCTTAATCA TAAAAATGCA TTATTTTGGG ACTCTCCAAG
  TTAGATTTAA GGCTAGATAA AATGCTGCCT TCACTCACTG AACAGATATG TCACAGGCAC
  Y
  TTTCATGACT CAATGAGAAG GCCAAGGTCA AACCCCTTCC CCCAATAGTC CATTGTAATC
  CAACTCACAG AATTAATCCA ACAATTTAAA AATGTTGGTA ATTATTTCCT AACAGGTTTC
  TGGTTATAAG GTCATCCCTG ATGTTATTAA TGACACTCGG TTATGTTTGC AGATAGGAGC
  TTGGCCGTTG TCCTCTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48307237	NES12188082	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33398231					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48307237	NES12188082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:78490724 () rs orientation: forward

Symbol	Name	Function Class
4930570E03Rik	RIKEN cDNA 4930570E03 gene	1192 bp upstream
Gm59773	predicted gene, 59773	within coordinates
Tssr139126	transcription start site region 139126	1149 bp upstream
Tssr139127	transcription start site region 139127	1170 bp upstream
Tssr139128	transcription start site region 139128	1186 bp upstream