rs33398306 SNP Detail

Summary

• ID
  rs33398306
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100824223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTAATGA CCTTGAACCT
  GCTATTCCTG CCTCCACTTC CCAAGGGCTG GGATTATTGG CAAGTGCCAT GCCTGGCTCA
  GCAGTGAATT TTTAAATAAG CCAAACTATC TAGAACTTGC TGAGTCCTGG AGCCTGTTCA
  ACCCCTTCCT TCCCTGTCTC AGCCCAATTT TAATTTTTTT ATTATAAAGA GCTAAACAAA
  S
  TTATTGGTGC TTCTATTTTC ATACAAGCTA ATCCCACTAG ATGGCACTAA AGAGTCGCAT
  GTTAGGAATC GGGCCGTGCT AACCTCAGAA ACAAAAATAA GCTATCTGAA CTAGCAATGC
  ATTTCCCCGA TGATTTGTAC TGATATTATG ATTTTCTAGA TATGAACCAC AAGTCTCAAC
  CTCTTATTCG TTATAGGATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46808954	NES10731493	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	G	G	G	G		G	G		G
ss320850246	CHEV_3_100720830	CHEVERUD	SCREENING_POP	f	SNP								C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33398306					SNP	G	C	C	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46808954	NES10731493	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100824223 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1687 bp downstream
Rr581925	regulatory region 581925	within coordinates
Rr581926	regulatory region 581926	30 bp proximal