rs33398380 SNP Detail

Summary

• ID
  rs33398380
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114294506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTTGAG CTTCTCTGAG
  TCACAGGTGT CCAAGCTATG AGGTGGAAGC ATCAGGTAAG GACAGGCTCG TGGAACGGTG
  ATATTCTGGG ATGGGAGGGA TGGGGCGAAG AGGCTGAAGG CCCTCCGCGG GCACAGGTGT
  GTGGAAATTG AGTGTGTGCA ATGCCAGGGC AAGGAGGGAA GTCTGCATTT TTTAAAAAAA
  W
  TTTTTAGAGT GAAAAGCAGG CCCAGAGGAA GAGGTTGGCA GCTTTTTCAA ACAGTTCCCC
  CACATGTACA CACTTGGTAA CCTCTGTCCT GGCGACCCCG GTCCTATGCT ATAATGAGAG
  AGAGAGAGAG AGAGAGAGAG TGAGAGAGAG AGAGAGAGAG AGAGAGAGAT AGAAGCTCAT
  TGTAGTACAC AGCATTTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45774609	mCV24686152	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss149107472	ENSMUSSNP4396597	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss321652053	CHEV_5_114606454	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33398380					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114294506 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	1306 bp distal
Rr108155	regulatory region 108155	895 bp proximal
Rr120008	regulatory region 120008	428 bp proximal
Rr120009	regulatory region 120009	800 bp proximal
Tssr48071	transcription start site region 48071	1012 bp downstream
Tssr48072	transcription start site region 48072	978 bp downstream
Tssr48073	transcription start site region 48073	930 bp downstream