rs33398682 SNP Detail

Summary

• ID
  rs33398682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118734457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG GGTTTAATCT GGCAGGAGAT
  R
  CTTGTCTGTC AGATGAGTGT TTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45273669	mCV22544971	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147316881	ENSMUSSNP3963906	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320472575	CHEV_2_118729712	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33398682					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118734457 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	833 bp distal
Rr563370	regulatory region 563370	210 bp distal
Rr563372	regulatory region 563372	1875 bp distal
Rr563373	regulatory region 563373	1423 bp distal
Rr563374	regulatory region 563374	930 bp distal
Rr563375	regulatory region 563375	1475 bp proximal