rs33398735 SNP Detail

Summary

• ID
  rs33398735
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25103965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGAGAAAA TGCCCTGGCT CGAGCACCTT GACAGCACAT
  CCAGGACAGC TAGCCATTAA ATCTAAGTGT GTTATTCTTC CCAGGCAGTC TCTCATGGCA
  K
  CTAGGATGGT TCAATGTTAC CCGCTTAAAG CTCAGCACTG GGATCCACTG CACACTGTGC
  GGCCTTAGAC CCTTGGCTTG AGTGAGGGCC CGTAGGGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39531444	mCV25251497	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
ss145368928	ENSMUSSNP661065	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33398735					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25103965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	814 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	35 bp proximal
Rr405096	regulatory region 405096	1276 bp upstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1652 bp upstream
Tssr143106	transcription start site region 143106	971 bp upstream
Tssr143107	transcription start site region 143107	984 bp upstream
Tssr143108	transcription start site region 143108	1011 bp upstream
Tssr143109	transcription start site region 143109	1029 bp upstream
Tssr143110	transcription start site region 143110	1698 bp upstream
Tssr143111	transcription start site region 143111	1887 bp upstream
Tssr146788	transcription start site region 146788	868 bp downstream
Tssr146789	transcription start site region 146789	881 bp downstream
Tssr146790	transcription start site region 146790	909 bp downstream
Tssr146791	transcription start site region 146791	945 bp downstream
Tssr146792	transcription start site region 146792	1313 bp downstream
Tssr146793	transcription start site region 146793	1392 bp downstream