rs33398756 SNP Detail

Summary

• ID
  rs33398756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140093048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTATGAAGT AGCAGTGAAA ATAATTTTAT GGTTGAGAGT
  TACCACAGCG TTAGGAACTG TCTTAAAGGA TTGCATTGTT AGGAAGATTG AGAACCATGG
  Y
  TCTAAGTCAC CCTTACTCGT GTTCTATTAT AATAAGTCAA ACTCACCGGT CTGACAAGCT
  GGATTTGGGT AGCATCATAC TTTAATCTAT CATTGAGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45273559	mCV24492060	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147675452	ENSMUSSNP4800742	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33398756					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140093048 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			1186 bp distal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Intron
				Noncoding-Transcript-Variant