rs33399935 SNP Detail

Summary

• ID
  rs33399935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181301322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGCACTA AGTGCCATGG CTACCGGCGA ATTCTAGCAC
  TGTCCCTGTT CTCCCACTCA TCACAGAAGA TTGGAAACAA ACTGATTTGA TAGCACCCTC
  Y
  CAGCTCAGAT TGCCTGCACT CAAAGGTCCA GAATGTGTAT ACATCCATTG AGGCCCCAAT
  AAATGGAGCT AATGATGTGA TCTGATGCTT CTTGTCTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45273673	mCV22775653	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148402970	ENSMUSSNP3737339	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33399935					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181301322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12934	CpG island 12934	within coordinates
Gm29797	predicted gene, 29797	mRNA-UTR
Gm74533	predicted gene, 74533	156 bp upstream
Rr573063	regulatory region 573063	within coordinates
Rr573064	regulatory region 573064	104 bp distal
Rr573065	regulatory region 573065	192 bp proximal