rs33399983 SNP Detail

Summary

• ID
  rs33399983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134295186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAT GGATACAAAT CTAACACCCC
  Y
  GTATTTACTC GGTCCCTTAG AATAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45774077	mCV23024586	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss144502835	ENSMUSSNP4993556	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321695276	CHEV_5_134742202	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33399983					SNP	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134295186 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	733 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53619	transcription start site region 53619	1899 bp upstream
Tssr53620	transcription start site region 53620	254 bp upstream
Tssr53621	transcription start site region 53621	252 bp downstream