rs33400097 SNP Detail

Summary

• ID
  rs33400097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124047351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGA CTAAAGCATC TCCAGACAAA
  R
  CCTTTTTATG CTGCCCTGGC TATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45774274	mCV24596788	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss149200145	ENSMUSSNP181222	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321672048	CHEV_5_124359297	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs33400097					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124047351 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	1414 bp distal
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	550 bp distal
Rr399353	regulatory region 399353	1955 bp downstream
Tssr48809	transcription start site region 48809	1996 bp downstream
Tssr48810	transcription start site region 48810	1973 bp downstream
Tssr48811	transcription start site region 48811	1901 bp downstream
Tssr48812	transcription start site region 48812	1728 bp downstream
Tssr48813	transcription start site region 48813	1717 bp downstream
Tssr48814	transcription start site region 48814	1701 bp downstream
Tssr48815	transcription start site region 48815	1681 bp downstream
Tssr48816	transcription start site region 48816	1655 bp downstream
Tssr48817	transcription start site region 48817	1174 bp downstream
Tssr48818	transcription start site region 48818	1100 bp downstream
Tssr48819	transcription start site region 48819	180 bp downstream
Tssr48820	transcription start site region 48820	155 bp downstream
Tssr53283	transcription start site region 53283	1205 bp downstream