rs33400525 SNP Detail

Summary

• ID
  rs33400525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:36827767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG CCTTTCAGGA ACCCATCCTT
  R
  GTTGTCTCTG TGCCCGATGC TGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45774536	mCV23283557	ABI	CRAMUS_MOUSE	f	SNP	A	A	G				A		G
ss61137487	NES16647936	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G		A	G	G	A		A	A	A	A		A
ss148240000	ENSMUSSNP1767922	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss321512216	CHEV_5_37061544	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33400525					SNP	A	A	G	G	G	G	A	A	G	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61137487	NES16647936	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:36827767 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd579e	DNA segment, Chr 5, ERATO Doi 579, expressed	Intron
Gm25767	predicted gene, 25767	1235 bp upstream
Rr610244	regulatory region 610244	460 bp distal
Rr610245	regulatory region 610245	1279 bp proximal