rs33400571 SNP Detail

Summary

• ID
  rs33400571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3765869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCCAGC TGGAAAAAAA
  CAGATTGGCC ATTGTCCTGA TTCCATAATG GCAGTCAAGG TTGCCTCTTA AAATTGAGGT
  GTATGATTTA AATAATGCAT AATGAAGAGA TGAGAATTGT GGAAAAAATT CAGTATTAAA
  GGTAATCAGC CTGATAGAGA CCCATATTAT CTGAACCTCC TCCTTCTTTG TGCCAATTAG
  Y
  TGTCATGTCA GAGTGTAAAA CTGAGCTTCC ACTAATGGGG TGAGATGCAG TCATCACTTA
  TATTATAGAT AAAAGACAGA GGCCACTGAG TAGTCGCTAG CCCAGTTTTG GTTCTAGCAC
  ATCCTTCCTG GAAAGTAAAT TACAAAGTAT GTTCCTTTGT GGGTTACAGA GATCATTCTT
  TTCCAATACA GATCTGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46271461	mCV22849383	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148548666	ENSMUSSNP946471	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33400571					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3765869 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Gm16553	predicted gene 16553	within coordinates
Tssr80223	transcription start site region 80223	1678 bp downstream
Tssr80224	transcription start site region 80224	1693 bp downstream