rs33400663 SNP Detail

Summary

• ID
  rs33400663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117299123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGAAAAGG AACAAGGAGA GTAACAGGTC AAGCAAAAGG
  ACCTCATGGG AGGAGAGAGG ACAATGGGGT ACAAAGTAAA AAGATGAGAG AGCCAGCACC
  Y
  GACCTCAATA AAGCTTTGGG GGTAACCTGG ACACAACCAC TGAATTTTCC ATCCCAGCTC
  AATCTGCTAT ATGTGGGTCA CCTGGATTCC AACTCCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46271795	mCV23596307	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss145799673	ENSMUSSNP1494424	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss322838285	CHEV_8_119096284	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33400663					SNP	T	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117299123 () rs orientation: forward

Symbol	Name	Function Class
Tssr83067	transcription start site region 83067	492 bp upstream
Tssr83068	transcription start site region 83068	1578 bp downstream