rs33400813 SNP Detail

Summary

• ID
  rs33400813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153001275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTTACA CAGCAAAACC
  CTGTCTCAAA TATATATATT TCCTTATCAA TATAAATATC TTCTTTTATA TTATGTGTAG
  GGGTATTTTG CTGTATATAT GGCTACGCAT CATTCACATA CCTGGTCCCT ACAGAGGCCA
  TAAGAGGGCA TCAAACCCCC TGGAAATTGG AGTTACAGAC TGTTGTGCGC AGCCATGTTG
  R
  TGCTGGGACT CAAACTCTGA TATTCTAGAA GAGGATCTTC CAATGGTCTT AACTGCTGAG
  TCATGTCTCC AGCCCCATCA GTATTACTCT TTAACCAGAC ATAGTGGTAA GAAACTTCCA
  GGACTTAAGT TGCAGTAGAA CTGGCCACAA GTCTGCAATT CAGAATTACT ACAAGACTAT
  CTAGTAAATC CATCCTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45274256	mCV22910912	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss147986855	ENSMUSSNP865537	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33400813					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153001275 () rs orientation: forward

Symbol	Name	Function Class
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	1762 bp downstream
Rr39414	regulatory region 39414	1675 bp distal
Rr55859	regulatory region 55859	1325 bp proximal
Rr63655	regulatory region 63655	1668 bp distal
Rr397404	regulatory region 397404	1785 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	1948 bp upstream
Tssr20873	transcription start site region 20873	1937 bp upstream
Tssr20874	transcription start site region 20874	1966 bp upstream